Math and Biochem-Biophysics Research Webpage - Bo Li

Mathematics and Biochemistry-Biophysics

RESEARCH INITIATIVE

Presentations

  1. Bo Li, A Level-Set Variational Implicit Solvent Approach for Nonpolar Molecules. Talks given in Chinese Academy of Sciences, Summer 2006, the Second SIAM Conference on Computational Science and Engineering, Spring, 2007, and Zhejiang University, China, Summer 2007.
  2. Li-Tien Cheng, ICIAM, Zurich, 2007.
  3. Yang Xie, Modeling Non-Polar Molecules in Implicit Solvent Using the Level-Set Approach, Informal Seminar on Mathematics and Biochemistry-Biophysics, Department of Mathematics, UCSD, Summer 2007.
  4. John Shopple, Level Set Method in a Finite Element Setting, UCSD Computational and Applied Mathematics Seminar, November 6, 2007.
  5. Joachim Dzubiella, Variational Theory of Solvation, Summer School on Coarse-Grained Physical Modeling of Biological Systems, Center for Theoretical Biological Physics, UCSD, 2008.
  6. Bo Li, Coupling the level-set method with the variational implicit solvent modeling of molecular solvation, Summer School on Coarse-Grained Physical Modeling of Biological Systems, Center for Theoretical Biological Physics, UCSD, 2008.
  7. Bo Li, Coupling the level-set method with variational implicit-solvent models for molecular solvation, Center for Theoretical Biological Physics, UCSD, October 10, 2008.
  8. Bo Li, Coupling the level-set method with variational implicit-solvent models for molecular solvation,, IMA workshop: Solvation, December 8-12, 2009.
  9. Piotr Setny, Hydrophobic effects in vicinity of concave nanoscopic objects, Informal Seminar on Mathematics and Biochemistry-Biophysics, Department of Mathematics, UCSD, January 19, 2009.
  10. Zhongming Wang, A level-set variational implicit-solvent approach to hydrophobic interactions, Informal Seminar on Mathematics and Biochemistry-Biophysics, Department of Mathematics, UCSD, January 27, 2009.
  11. Bo Li, The Poisson-Boltzmann Theory of Continuum Electrostatics with Application to Variational Solvation of Molecules. Informal Seminars on Mathematics and Biochemistry-Biophysics, UCSD, February 3, 2009.
  12. Zhongming Wang, A Bloch Band Based Level Set Method for Computing The Semiclassical Limit of Schrodinger Equations,, Kinetic Description of Multiscale Phenomena, Kinetic Young Researchers Workshop, CSCAMM, Univ. of Maryland, March 3-5, 2009.
  13. Bo Li, The Poisson-Boltzmann Theory of Continuum Electrostatics with Application to Variational Solvation of Molecules. Variations of this talk were given in Informal Seminar on Mathematics and Biochemistry-Biophysics, UC San Diego, February 3, 2009, and International Workshop on Selected Topics in Mathematical and Numerical Aspects of Materials and Biological Sciences, Zhejiang University, Hangzhou, China, September 11, 2009.
  14. Bo Li and Zhongming Wang, Solutions to a Model Poisson-Nernst-Planck System and the Determination of Reaction Rates, International Workshop on Selected Topics in Mathematical and Numerical Aspects of Materials and Biological Sciences, Zhejiang University, Hangzhou, China, September 11, 2009.
  15. Bo Li, Level-Set Variational Solvation Coupling Solute Molecular Mechanics with Continuum Solvent, International Workshop on Continuum Modeling of Biomolecules, Institute of Computational Mathematics and Scientific/Engineering Computing, Chinese Academy of Sciences, Beijing, China, September 14-16, 2009.
  16. Bo Li, Continuum Electrostatics for Ionic Solutions with Nonuniform Ionic Sizes, Seminar of Institute of Computational Mathematics and Scientific/Engineering Computing, Chinese Academy of Sciences, Beijing, China, September 18, 2009.
  17. Bin Dong, Applications of PDEs and Optimization in Medical Image and Surface Processing, Informal Seminar on Mathematics and Biochemistry-Biophysics, UCSD, October 8, 2009.
  18. Bo Li, Level-Set Minimization of Potential Controlled Hadwiger Valuations for Molecular Solvation, Workshop on Numerical Methods for PDEs, Sun Yat-Sen University, China, 7/28--8/1, 2010.
  19. Bo Li, Level-Set Minimization of Potential Controlled Hadwiger Valuations for Molecular Solvation. Taiwan Mathematical Society Annual Meeting, National Chuanghua University, Taiwan, December 10-12, 2010.
  20. Bo Li, Overview of Lectures. Short Courses on Applied Mathematics in Biophysics, National Center for Theoretical Sciences, and Center for Mathematical Modeling and Scientific Computing of Chiao Tung University, Taiwan, December 15 and 16, 2010.
  21. Bo Li, Dielectric Boundary Forces: A Shape Derivative Approach. Special Seminar, Department of Mathematics, Zhejiang University, Hangzhou, China, December 17, 2010.
  22. Bo Li, Dielectric Boundary Forces in Variational Implicit-Solvent Modeling of Biomolecules. Informal Seminar on Mathematics and Biochemistry-Biophysics, Department of Mathematics, UC San Diego, June 2, 2011.
  23. Bo Li, Variational Implicit-Solvent Modeling of Biomolecular Solvation. Seminar, Department of Mathematics, Shanggai Jiaotong University, China, June 10, 2011.
  24. Bo Li, Variational Implicit-Solvent Modeling of Biomolecular Solvation. International Conference on Applied Mathematics and Interdisciplinary Research, Naikai University, Tianjin, and Beijing Computational Science Research Center, Beijing, China, June 13-16, 2011.
  25. Bo Li, Mean-Field Description of Ionic Size Effects. Seminar, Institue of Computational Mathematics and Scientific/Engineering Computing, Chinese Academy of Sciences, Beijing, China, June 17, 2011.
  26. Bo Li, Dielectric Boundary Forces in Variational Implicit-Solvent Modeling of Biomolecules. Institue of Computational Mathematics and Scientific/Engineering Computing, Chinese Academy of Sciences, Beijing, China, June 17, 2011.
  27. Bo Li, Level-Set Variational Implicit-Solvent Modeling of Biomolecular Solvation. Department of Applied Mathematics, University of Washington, Seattle, August 24, 2011.
  28. Bo Li, Level-Set Variational Implicit-Solvent Modeling of Biomolecular Solvation. Department of Molecular Biophysics and Physiology, Rush University Medical Center, September 21, 2011.
  29. Bo Li, Effective Dielectric Boundary Forces in Variational Implicit Solvation. Minisymposium: Partial Differential Equations for Biomolecular Interactions: Electrostatics, Hydrodynamics, and Fluctuations, Organizers: Paul Atzberger and Bo Li, SIAM Conference on Analysis of PDEs, San Diego, November 14-17, 2011.
  30. Bo Li, Modeling and Simulation of Biomolecular Interactions with Solute Mechanics and Implicit Solvent. Minisymposium on Fuel Cells, FACM 2012: Frontiers in Applied and Computational Mathematics 2012 Conference, New Jersey Institute of Technology, Newark, New Jersey, May 18-20, 2012.
  31. Bo Li, Level-set Variational Implicit-Solvent Approach to Biomolecular Interactions. Minisymposium: Computational Biological Modeling at the Interface of Molecular Simulation and Continuum Diffusion, Organizers: Andrew Gillette and Pete Kekenes-Huskey, SIAM Conference on the Life Sciences, San Diego, August 7-10, 2012
  32. Bo Li, Continuum Electrostatics and Variational Solvation. Minisymposium: Advanced Mathematical Models of Protein-Solvent Interactions Organizers: Jay Bardhan and Bo Li, SIAM Conference on the Life Sciences, San Diego, August 7-10, 2012
  33. Bo Li, Level-Set Variational Implicit Solvation: From Dielectric Boundary Relaxation, to Solute Mechanical Interactions, and to Solvent Fluid Fluctuations. Symposium: Continuum Solvation Modeling in Biological Systems: Developments and Applications, Organizers: Emil Alexov and Ray Luo, ACS Fall meeting, Philadelphia, August 19-24, 2012.
  34. Bo Li, Variational Implicit Solvation of Biomolecules. Semianr, Department of Mathematics, Tongji University, Shanghai, China, September 20, 2012.
  35. Bo Li, Variational Implicit Solvation of Biomolecules. Seminar, Department of Mathematics, Fudan University, Shanghai, China, September 19, 2012.
  36. Bo Li, Variational Implicit Solvation of Biomolecules. Seminar, College of Science, Ningbo University, Ningbo, China, September 24, 2012. Bo Li, Variational Implicit Solvation of Biomolecules. Seminar, Department of Mathematics, Zhejiang University, Hangzhou, China, September 25, 2012.
  37. Bo Li, Motion of a Cylindrical Dielectric Boundary. Seminar, Institute of Applied Mathematics, Chinese Academy of Sciences, Beijing, China, September 26, 2012.
  38. Bo Li, Variational Implicit Solvation of Biomolecules. Seminar, Institute of Computational Mathematics Chinese Academy of Sciences, Beijing, China, September 27, 2012.
  39. Bo Li, Variational Implicit Solvation of Biomolecules. KI-Net Worskhop: Kinetic Equations and Molecular Modeling, Iowa State University, Ames, Iowa, October 20 and 21, 2012.
  40. Bo Li, Variational Implicit Solvation: Empowering Mathematics and Computation to Understand Biological Building Blocks (Large file: 10.1MB). Distinguished Seminar in Computational and Mathematical Biology (a 90-minute lecture), Department of Molecular Biology and Biochemistry and Center for Mathematical and Computational Biology, UC Irvine, October 25, 2012.
  41. Bo Li, Variational Implicit Solvation of Biomolecules, Applied Mathematics Colloquium, Illinois Institute of Technology, November 12, 2012.
  42. Bo Li, The Poisson-Boltzmann Theory and Variational Implicit Solvation of Biomolecules, CAMP/Nonlinear PDE seminar, Department of Mathematics, University of Chicago, November 14, 2012.
  43. Bo Li, Developing Modern Mathematical Methods and Computational Tools for Biological Physics, Center for Theoretical Biological Physics External Advisory Committee Meeting, Rice University, January 10 and 11, 2013.
  44. Bo Li, The Poisson-Boltzmann Theory and Variational Implicit Solvation of Biomolecules, PDE/Applied Math Seminar, Department of Mathematics, UC Santa Barbara, March 5, 2013.
  45. Bo Li, Variational Implicit Solvation of Biomolecules, Applied Mathematics Seminar, Department of Mathematics, Ohio State University, March 28, 2013.
  46. Bo Li, Variational Implicit Solvation of Biomolecules: From Theory to Numerical Computations, CECAM Workshop: New Perspectives in Liquid State Theories for Complex Molecular Systems, Institut Henri Poincare, Paris, France, June 20-22, 2013.
  47. Bo Li, Dielectric Boundary Force in Biomolecular Solvation, Applied Mathematics and Analysis Seminar, Department of Mathematics, Duke University, August 26, 2013.
  48. Bo Li, Interface Motion Driven by Minimization of Surface and Electrostatic Energies, Seminar, School of Mathematical Sciences, Fudan University, Shanghai, China, September 4, 2013.
  49. Bo Li, Mean-Field Analysis and Computation of Electrostatics in Ionic Solution, Seminar, Department of Mathematics, Tongji University, Shanghai, China, September 5, 2013.
  50. Bo Li, Interface Motion Driven by Minimization of Surface and Electrostatic Energies, Seminar, Department of Mathematics, Tongji University, Shanghai, China, September 6, 2013.
  51. Bo Li, Continuum Electrostatics and Variational Implicit Solvation of Charged Molecules, Workshop: Computational Challenges in Complex Charged Systems, Shanghai Jiao Tong University, Shanghai, China, September 9 and 10, 2013.
  52. Bo Li, Some Partial Differential Equations Arising From Biological Physics, Seminar, Department of Mathematics, Tongji University, Shanghai, China, September 10, 2013.
  53. Bo Li, Variational Implicit Solvation of Biomolecules, Center for Scientific Computation and Mathematical Modeling (CSCAMM) Seminar, University of Maryland, College Park, September 18, 2013.
  54. Bo Li, Variational Implicit Solvation with Application to Molecular Recognition, Third Biological Diffusion and Brownian Dynamics Brainstorm (BDBDB3), with Live Video Conference Sessions, Heidelberg, Germany, and UC San Diego, USA, October 7-9, 2013.

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Last updated by Bo Li on October 14, 2013. © Bo Li, 2007-2013.